PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g03060

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 182aa MW: 21160.5 Da PI: 10.4008

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g03060	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.2	7.4e-45	39	165	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 pGfrFhPt+eel+++yLk+ ++++kl+ +vi ++iy ++Pw+Lp +k +e+ewyfF++ ++k+ + ++nr+t++g+Wkatg+d+++ s ++ CA02g03060 39 PGFRFHPTEEELINFYLKRIIDDNKLDS-NVIGFLNIYLSDPWELPGLAKPGEREWYFFVPINRKHGPKGKPNRTTRNGFWKATGSDRPIRSYldPKKI 136 9***********************99.99***********8888899*********************************998878889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy grapkg++tdWvm+eyrl CA02g03060 137 IGLKKTLVFYGGRAPKGSRTDWVMNEYRL 165 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-50	37	170	IPR003441	NAC domain
PROSITE profile	PS51005	48.116	37	181	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	39	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSAKQDKSFG LYKRLLNLCS HKHTVREKKK MSPAELELPG FRFHPTEEEL INFYLKRIID 60 DNKLDSNVIG FLNIYLSDPW ELPGLAKPGE REWYFFVPIN RKHGPKGKPN RTTRNGFWKA 120 TGSDRPIRSY LDPKKIIGLK KTLVFYGGRA PKGSRTDWVM NEYRLPDEHK VFSCAKTEFK 180 I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-41	28	165	5	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	4e-87	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	4e-87	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016558599.1	1e-101	PREDICTED: putative NAC domain-containing protein 94 isoform X2
Swissprot	Q10S65	5e-68	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2G3D2P0	1e-119	A0A2G3D2P0_CAPCH; Putative NAC domain-containing protein 94
STRING	Solyc02g061780.2.1	4e-87	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-66	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]