PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g04320
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WOX
Protein Properties Length: 345aa    MW: 38390.5 Da    PI: 7.3829
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g04320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.9e-173999257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++R+++ +eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  CA02g04320 39 KPRWNPRPEQIRILETIFNSgMVNPPRDEIRKIRARLqeygQVGDANVFYWFQNRKSRSKH 99
                89*****************99*************************************995 PP
2Wus_type_Homeobox111.35.1e-3638101265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
         CA02g04320  38 PKPRWNPRPEQIRILETIFNSGMVNPPRDEIRKIRARLQEYGQVGDANVFYWFQNRKSRSKHKQ 101
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1233105IPR009057Homeodomain-like
PROSITE profilePS5007110.31735100IPR001356Homeobox domain
SMARTSM003893.0E-837104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-638106IPR009057Homeodomain-like
CDDcd000869.51E-738101No hitNo description
PfamPF000469.6E-153999IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFKSKPCNSH HHQWQHDINS SLIQPRPPCN QEERSPEPKP RWNPRPEQIR ILETIFNSGM  60
VNPPRDEIRK IRARLQEYGQ VGDANVFYWF QNRKSRSKHK QRHLQAKAQQ QNNSQAAPSN  120
SSSSSSDKSS PNSLTFSIGS SNNVMNLLNS PTASVNQQNY NNDQFFTTTE QPFFFTVQQP  180
VQTHDNSAMT QGFCFPDSTS SSSGLALSEL MGISQTPSSS KKAENEKMNL QSQLMSYTVT  240
STPTTVSPLI STTTIPTISH IQGASLDPNE AVGPTRSTVF INDVAFEIGL GPFNVREVFG  300
EDAVLFHSSG EPLITNEWGL TLQPLQHGAF YYLVRTSTPS THDI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4147610.0KC414761.1 Capsicum annuum cultivar Maor compound inflorescence mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562048.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
TrEMBLA0A1U8G0A10.0A0A1U8G0A1_CAPAN; WUSCHEL-related homeobox 9-like isoform X1
STRINGSolyc02g077390.1.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-49homeobox-3