PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g04350

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 417aa MW: 46268.1 Da PI: 8.5538

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g04350	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.1	1.2e-27	50	143	1	92
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC ++ C++ ++fpa+++ +f +vhk+FG +nv+k +k+l++ ++++++s ++eA+ +++dPv+G +g +++l+qql+++k CA02g04350 50 ACASCKHQRKKCIEGdCAMWRHFPATKMDEFLAVHKVFGIANVTKKIKSLDNVAqQDETIKSFLWEARLWQEDPVHGPLGAYRQLEQQLKEEKR 143 7*********8866******************************6654399******************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.314	49	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-28	50	144	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MFFVPELLYN NILLLYCLAG GSPSMSNNNN NNYLHNAEDE LHEAGSNRPA CASCKHQRKK 60 CIEGDCAMWR HFPATKMDEF LAVHKVFGIA NVTKKIKSLD NVAQQDETIK SFLWEARLWQ 120 EDPVHGPLGA YRQLEQQLKE EKRNKQPQMV PLANAAQLPT TTTSDTSMHL PPLAVDESMV 180 APRANSANNP MHTYNQQLYN MLNTNVPNYT NPLPQHGYGG ETLGTTSTGQ NLSDVCTGNN 240 GLGYGRPIQQ AQNAFPSHCS RPIQQVQNAF IPRQVGVHHS TTQNVAHNVP LQQQIYPHNH 300 MMDLVQVKRR LEQSDQHMNP SFSGRHIRGR VIGPISTTSS ALVGPYGPIS STSSGTFVNL 360 TAATTGTMVS PSVNVRHVDD RRNQRAAALP QDFTNYIHTN LPGKCFISFK FYITVV*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MFFVPELLYN NILLLYCLAG GSPSMSNNNN NNYLHNAEDE LHEAGSNRPA CASCKHQRKK  60
CIEGDCAMWR HFPATKMDEF LAVHKVFGIA NVTKKIKSLD NVAQQDETIK SFLWEARLWQ  120
EDPVHGPLGA YRQLEQQLKE EKRNKQPQMV PLANAAQLPT TTTSDTSMHL PPLAVDESMV  180
APRANSANNP MHTYNQQLYN MLNTNVPNYT NPLPQHGYGG ETLGTTSTGQ NLSDVCTGNN  240
GLGYGRPIQQ AQNAFPSHCS RPIQQVQNAF IPRQVGVHHS TTQNVAHNVP LQQQIYPHNH  300
MMDLVQVKRR LEQSDQHMNP SFSGRHIRGR VIGPISTTSS ALVGPYGPIS STSSGTFVNL  360
TAATTGTMVS PSVNVRHVDD RRNQRAAALP QDFTNYIHTN LPGKCFISFK FYITVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-12	45	138	7	97	LOB family transfactor Ramosa2.1
5ly0_B	5e-12	45	138	7	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G3D5N2	0.0	A0A2G3D5N2_CAPCH; Uncharacterized protein
STRING	Solyc02g077380.1.1	1e-125	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-21	LOB domain-containing protein 2