PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g04730

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 112aa MW: 12423.9 Da PI: 10.5649

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g04730	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.5	2.3e-33	16	72	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh hAl+R+Rg+gGrF CA02g04730 16 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 72 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.1E-36	14	75	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.561	15	75	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.2E-28	17	72	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-23	18	40	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	20	40	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-23	49	72	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MGIQQAGVPL PSDAIDEPVF VNAKQYHGIL RRRQSRAKAE SEKKLLKARK PYLHESRHLH 60 ALKRARGCGG RFLTAKKTDN QQKQDESGDK SQVNTNLESG KDRIASSEND S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-24	15	85	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013370	1e-148	BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559376.1	3e-77	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016559377.1	3e-77	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016559378.1	3e-77	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016559379.1	3e-77	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016559380.1	3e-77	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016559381.1	3e-77	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	3e-47	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1U8FJF9	8e-76	A0A1U8FJF9_CAPAN; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2G3A6S1	8e-76	A0A2G3A6S1_CAPAN; nuclear transcription factor Y subunit A-7 isoform X1
STRING	Solyc02g069860.2.1	1e-72	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	9e-41	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]