PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g05270
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 242aa    MW: 26581.9 Da    PI: 7.8512
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g05270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20135169135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  CA02g05270 135 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 169
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.048129165IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-19129181IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-14132170No hitNo description
Gene3DG3DSA:3.30.50.102.5E-17133169IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-12134166No hitNo description
PfamPF003205.4E-18135169IPR000679Zinc finger, GATA-type
PROSITE patternPS003440135160IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNSCGSAYCH GGPCTCGLYY GQNNDTSAYS MFYSQYHQKD ENYLENMYSF ANSSPSSSSS  60
SVDCTLSLGT PSTRLSTNEN EKRVHDTHER RSSSYMSKCW NILQNKNHTT NKSSRGSSNA  120
NTNSSGADPL VARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRYKKEERR ASAAAVATAN  180
GGGMDSSQHM INGSWVHHSQ AQKMPCYSSA YGNHEFRFTE DDDRDSDSAI SFWPFLASQH  240
C*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561845.11e-180PREDICTED: GATA transcription factor 19-like
TrEMBLA0A2G3A4B11e-180A0A2G3A4B1_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000400741e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-36GATA family protein