PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g05350
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 341aa    MW: 36617.1 Da    PI: 6.1166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g05350genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.28.6e-24241303163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkr +rkq+NRe+ArrsR+RK+ae+eeL+ kv++L++eN+ Lk+el +l++e++kl+se+
  CA02g05350 241 ERELKRLKRKQSNRESARRSRLRKQAECEELQHKVETLSNENHGLKEELRKLSEECEKLTSEN 303
                 89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.4E-31192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.7E-19236300No hitNo description
SMARTSM003388.9E-23241305IPR004827Basic-leucine zipper domain
PfamPF001701.0E-21241303IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093243306IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-12244300No hitNo description
CDDcd147021.94E-23246296No hitNo description
PROSITE patternPS000360248263IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGTGEESTPT KPSKATSTQE AQSTPSYPDW SSMQAYYGAG AAPPFFPSTV ASPTPHPYMW  60
GSQHPLMPPY GAPVPYPALY PPAGVYAHPN MPMTPNTLQT NPESDNKAPD GKDQNTSKKL  120
KGSSGGKTGE SGKAASGSGN DGARRSAESG SEGSSHDNDE NDNHEFSADK SRSFDLMLAN  180
GANAQNNPAT GNPVAMPATN LNIGMDLWNA PSAGPGMIKM RSNQPGFSPA SGLGREWIQD  240
ERELKRLKRK QSNRESARRS RLRKQAECEE LQHKVETLSN ENHGLKEELR KLSEECEKLT  300
SENNSIKDEL TRLCGPEAVS KLESSSNAMH LQSNVEEANS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257263RRSRLRK
2257264RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138730.0BT013873.1 Lycopersicon esculentum clone 132853R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558664.10.0PREDICTED: G-box-binding factor 1-like isoform X1
RefseqXP_016558665.10.0PREDICTED: G-box-binding factor 1-like isoform X1
RefseqXP_016558666.10.0PREDICTED: G-box-binding factor 1-like isoform X1
SwissprotP427741e-103GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A1U8FIW60.0A0A1U8FIW6_CAPAN; G-box-binding factor 1
TrEMBLA0A2G3A4B90.0A0A2G3A4B9_CAPAN; G-box-binding factor 1-like isoform X1
STRINGSolyc02g062950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.23e-72G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]