PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g05990
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SRS
Protein Properties Length: 363aa    MW: 39634.9 Da    PI: 7.2327
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g05990genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.68.1e-691402883154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101
                  g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql a++++  + ++++++k+kr+ +  ++s+l s++l+s+++   le
  CA02g05990 140 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLMALQQEGHN-NNNNNNKSKRQREDPSTSSLVSSRLPSTTTG--LE 235
                 5789*************************************************9998766544.4444445555555588899999999999765..89 PP

      DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 + ++P++vs++avf+c+++ss+dd+e++laYq+avsigGhvfkGiLydqG e+
  CA02g05990 236 VGKFPAKVSTSAVFQCIQMSSIDDAEDQLAYQAAVSIGGHVFKGILYDQGHES 288
                 999***********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.2E-65142287IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-27144186IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-24238285IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MANFFSLGAG SGNQEQQQQQ EISSCHRSNN HNPAVPTEIS QESWFLYRND HNNQEIPTTY  60
KGFELWQSDT TTQHQPEQNQ HQQQHQFRHP IYPLQDFYST AVGLGVGPSR SGFDLSADPT  120
LYAGDHEASR SGFMMMRSGG GGISCQDCGN QAKKDCQHMR CRTCCKSRGF QCQTHVKSTW  180
VPAAKRRERQ QQLMALQQEG HNNNNNNNKS KRQREDPSTS SLVSSRLPST TTGLEVGKFP  240
AKVSTSAVFQ CIQMSSIDDA EDQLAYQAAV SIGGHVFKGI LYDQGHESQY NNMSAAGGDT  300
SSGGSAGVQN HHNSTAVAXX GGAGTAVRPT EASNFHDPSL FPTPLSTFMV AGTQFFPPSR  360
SP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213KSKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3319100.0KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561846.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
SwissprotK4B6C91e-169EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A1U8FRM00.0A0A1U8FRM0_CAPAN; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGPGSC0003DMT4000401071e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-67Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]