PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g07170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 494aa    MW: 53990.3 Da    PI: 5.897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g07170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-154993147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G   W+ I +++g  +t+ q++s+ qk+
       CA02g07170 49 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 93
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-164397IPR009057Homeodomain-like
PROSITE profilePS5129421.1794498IPR017930Myb domain
TIGRFAMsTIGR015572.6E-174796IPR006447Myb domain, plants
SMARTSM007173.6E-124896IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-84989IPR009057Homeodomain-like
PfamPF002491.9E-124992IPR001005SANT/Myb domain
CDDcd001675.30E-95194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
NQAEGAWQGA SSVNSSKLEI VATQEKAPTC LANKNALKVR KPYTITKQRE KWTEEEHQRF  60
LEALKLYGRA WRQIEEYVGS KTAIQIRSHA QKFFAKVARD SVNDGDESLN AIDIPPPRPK  120
KKPLHPYPRK MVDSPVANKA VSGQPESSPS PNVSGRVSRS PDSVLSAIGS GVSEYPVAEQ  180
QNSRFSPASC TTDVHTANII SAENDDESMT SNSSTVEEVH VELKPISAST SPIANSDMVI  240
PLEACNLSAL PCYLGCTLTS GLYVPLQECD IVHRENSCNG EKLAVEAPSA SIKLFGQTVF  300
IPDANNLALR APYNCNSLPS KSTEKEIKIS SEDVLHSFQA NQANSQFMLA MVPGNMIPPA  360
SWLSHNMLEN NPEITTVFPT TVSWWSWYQD LVNRSILSCD QKAMETAVHC QGPKDEEPQR  420
EGSSTGSSIG SASEVDDGNR SSETAESKCT AKSYKWNNSK GFVPYKRCLA ERDDKSSGAV  480
LEERESQRVR VCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518040.0AC151804.1 Solanum demissum chromosome 5 clone PGEC475B22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563966.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLA0A1U8FXT50.0A0A1U8FXT5_CAPAN; protein REVEILLE 1-like isoform X1
STRINGPGSC0003DMT4000658500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.15e-40MYB_related family protein