PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g07550

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 55aa MW: 6058.14 Da PI: 9.9523

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g07550	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.9	2e-11	3	35	2	34
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdae 34 ie k r+vtfskR+ ++ KA+EL +L++a+ CA02g07550 3 LIEPKDARYVTFSKRKVSLFTKANELLILTGAD 35 699999************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0052	1	50	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.49E-11	1	35	No hit	No description
PROSITE profile	PS50066	12.054	1	35	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-10	1	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-11	4	35	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 55 aa Download sequence Send to blast
MKLIEPKDAR YVTFSKRKVS LFTKANELLI LTGADNVFSS FHLGESHIPL APLI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G3A5C7	5e-31	A0A2G3A5C7_CAPAN; Uncharacterized protein