PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g07700
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 216aa    MW: 24961.9 Da    PI: 4.7278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g07700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-149871498
                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +   +pk+fa+++ ++  ++  + le +sg++Wev++  + + g+++l+kGW++F++   +  g f++F+++ rs    +v +f+
  CA02g07700  9 CTQKIPKDFASRYCKNMLNP--VYLEVPSGEVWEVEV--EHSEGQMWLSKGWQDFCDYYSISCGHFLMFEYNARSHY--NVIIFD 87
                5568*********5454444..***************..99999**************************9876555..676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.266189IPR003340B3 DNA binding domain
SMARTSM010192.2E-6189IPR003340B3 DNA binding domain
CDDcd100175.93E-15787No hitNo description
SuperFamilySSF1019362.94E-18796IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-19889IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-111186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKLSPDFLCT QKIPKDFASR YCKNMLNPVY LEVPSGEVWE VEVEHSEGQM WLSKGWQDFC  60
DYYSISCGHF LMFEYNARSH YNVIIFDLSA AEIEYPYSSA YGIRTIHCQG THHAPSTDRP  120
ESDDSVDILE GIPRSQKLKE KNPDLVERSL DNKGHCPLGQ SSKRKRHDGD TEDDISIDMH  180
IKRMEVEKSQ EDIDFPSFTR EGQSEDLICY LSYWL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622351.11e-101PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
RefseqXP_016472696.11e-101PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X5
TrEMBLA0A2G2XCE01e-150A0A2G2XCE0_CAPBA; Uncharacterized protein
TrEMBLA0A2G3D3241e-150A0A2G3D324_CAPCH; Uncharacterized protein
STRINGXP_009622351.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein