PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g07710
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 825aa    MW: 92273.2 Da    PI: 9.8297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g07710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.9e-1625109494
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  + ps+v++  +l++  kfa+++ +++ +   l+l  +   sW+v +  + +sg     +GWk Fv +n+Lk+gD+++F++++  +  l+v
  CA02g07710  25 FMQPSYVSTPFNLSIALKFARKYFLENDG--NLVLHVPGRGSWSVIC--TIGSGNAKVHSGWKAFVLENELKVGDVCIFEVIKGAQ--LFV 109
                 6789*******************777545..6***************..99999999***********************886433..344 PP
2B354.62e-17279366596
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 + ps+v++  +l ++ +fa+++ +++ +   l+l+ + + sW+vk+  + +s+     +GWk Fv +n+Lk+gD++vF++++  +    v++
  CA02g07710 279 MQPSYVSRPYILNISSTFARKYFLENDG--NLVLRVPGSGSWSVKY--TICSKNAKVHSGWKAFVIENKLKVGDVCVFEVSKGAQLFVDVTI 366
                 679999999*************777545..6***************..888888899**********************7654443345555 PP
3B346.28.1e-15542631598
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + ps+v+k  +l+++  fa ++ ++k +  +l+l+ +   sW+vk+  + + ++  ++  WkeFv++n+Lk gD++vF+l++ ++  + v++fr
  CA02g07710 542 MQPSYVSKPYNLRISFLFAWKYFLEK-C-GDLVLRVPGRGSWSVKY--DLGVSAARIQFTWKEFVQDNKLKIGDVCVFELIKGTQPIFDVTIFR 631
                 67999****99***********9885.4.38***************..555555556666*******************997665556777776 PP
4B342.61.1e-137368151394
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 + rl++  + a+++ ++ ++++ l++ +++  +W vk++   +     +++GW eFv +n+Lk+gD++vF+  +rse  ++v
  CA02g07710 736 QMRLIIMLSVARKFFSSRHSEVVLQVSSKREIQWAVKCTLGIS--NAKFSAGWMEFVLDNNLKVGDVCVFEWANRSELLFNV 815
                 4788999999999977777888899999999*******55333..45599*********************76666654444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-2114114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2015110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1620114No hitNo description
SMARTSM010197.0E-1122117IPR003340B3 DNA binding domain
PROSITE profilePS5086311.50522117IPR003340B3 DNA binding domain
PfamPF023626.2E-1324109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-22267369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-21268368IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-12274370IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407275370IPR003340B3 DNA binding domain
CDDcd100171.81E-18279368No hitNo description
PfamPF023622.9E-13279363IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-20530631IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-18531631IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-11537633IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335538633IPR003340B3 DNA binding domain
CDDcd100173.28E-16542631No hitNo description
PfamPF023621.3E-11542631IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19712818IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-17714818IPR015300DNA-binding pseudobarrel domain
CDDcd100177.28E-14719819No hitNo description
SMARTSM010193.2E-6720821IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237724821IPR003340B3 DNA binding domain
PfamPF023625.7E-11735817IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MDKESSTAYQ KAKAFKSKNP FIISFMQPSY VSTPFNLSIA LKFARKYFLE NDGNLVLHVP  60
GRGSWSVICT IGSGNAKVHS GWKAFVLENE LKVGDVCIFE VIKGAQLFVD VKIFHAAGST  120
LMHNIVGEIP VGSDSKSKVI LIDNSGPCSR PKVVHIEKLK LQTRGSCDLS SKIKEEHGEG  180
TEIEHSAEIL GHYSSGQSSK RNSLEVDSED DALEYPQEHV ASPSLTRNTK KSGGSCGMHK  240
QQSKISYDKN KKAMDKERAI AYQRAKAFKS KSPFIICFMQ PSYVSRPYIL NISSTFARKY  300
FLENDGNLVL RVPGSGSWSV KYTICSKNAK VHSGWKAFVI ENKLKVGDVC VFEVSKGAQL  360
FVDVTIFRAA GSTLMHNIVE EASGGSDSKS KFIKTDNSVL CIQPKAVQNE KLKQKTGGSY  420
DLNSKIKEEH GEGTEMEHSI KILGRCPLGH GSKRKRHEGE AEDDVSIGIH TKSIKVEKSQ  480
EDVASPSFTR KPKKSGESCR MHKQQTEMVY AVNMTVLGKE RTRAYQRAKA FKSKNPFVIY  540
FMQPSYVSKP YNLRISFLFA WKYFLEKCGD LVLRVPGRGS WSVKYDLGVS AARIQFTWKE  600
FVQDNKLKIG DVCVFELIKG TQPIFDVTIF RGAENKSMHK INEGVSNCDN KMVKIENSVP  660
CSQPKIVHRR KLNLEKKQKG DSDCFFTSKI EEELSEGTVI AKEMVMAYQK AKSFTSTNPF  720
FICVMHPSYV SPARGQMRLI IMLSVARKFF SSRHSEVVLQ VSSKREIQWA VKCTLGISNA  780
KFSAGWMEFV LDNNLKVGDV CVFEWANRSE LLFNVIIFPS AEGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1824281818141B3 domain-containing transcription factor VRN1
4i1k_B6e-1824281818141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567861.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X1
TrEMBLA0A1U8G9510.0A0A1U8G951_CAPAN; B3 domain-containing protein Os03g0619600-like isoform X1
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-21B3 family protein