PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g08200
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 184aa    MW: 21722.1 Da    PI: 9.8513
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g08200genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32.1e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ rqvtfskRr g+lKK +E+SvLCdaeva+i+fs++gkl+eys+
  CA02g08200  9 KRIENKISRQVTFSKRRSGLLKKTNEISVLCDAEVALIVFSPNGKLFEYST 59
                79***********************************************96 PP
2K-box94.41.9e-3181173798
       K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +   +e+  e+++ e  kL +++e Lqr++Rh++Ge+L+  +l+e q LeqqL+++lk+iR++Kn+l+le+i++lqkkekelqe+n+ ++kk+
  CA02g08200  81 NGnDTETYKENWTLECPKLMARVELLQRNIRHFMGEELDAFNLREFQCLEQQLDTALKRIRTRKNQLMLESISQLQKKEKELQERNNLISKKV 173
                 3335788899*****************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
CDDcd002652.03E-39276No hitNo description
SuperFamilySSF554552.49E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2586173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.49389179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRGRVELKR IENKISRQVT FSKRRSGLLK KTNEISVLCD AEVALIVFSP NGKLFEYSTQ  60
SSMESILERY ENYSYAERKL NGNDTETYKE NWTLECPKLM ARVELLQRNI RHFMGEELDA  120
FNLREFQCLE QQLDTALKRI RTRKNQLMLE SISQLQKKEK ELQERNNLIS KKVYIYVLRA  180
VFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19189189MEF2 CHIMERA
6byy_B2e-19189189MEF2 CHIMERA
6byy_C2e-19189189MEF2 CHIMERA
6byy_D2e-19189189MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558977.11e-122PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN62e-84FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1U8FIA61e-121A0A1U8FIA6_CAPAN; Agamous-like MADS-box protein AGL8-like protein
TrEMBLA0A2G3A5M21e-121A0A2G3A5M2_CAPAN; truncated transcription factor CAULIFLOWER A-like
STRINGPGSC0003DMT4000683251e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]