PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g08280
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 208aa    MW: 23392.1 Da    PI: 10.5373
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g08280genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.32e-2838105269
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssss 69 
                  g+kdrhsk+ T++g+RdRR+Rls+++a +++ Lqd+LG+d++sk i+WLl++ak+ i +l+  + ++
  CA02g08280  38 FGGKDRHSKVLTAKGLRDRRIRLSVPTALQLYVLQDKLGLDQPSKVIDWLLNEAKHDIYQLPPHQMPP 105
                 689**********************************************************9995555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.5984098IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-2740103IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTTGEVDPRD NVTKTPKKSS TSWTRFKDPR IVRVARAFGG KDRHSKVLTA KGLRDRRIRL  60
SVPTALQLYV LQDKLGLDQP SKVIDWLLNE AKHDIYQLPP HQMPPIGREG LPLNELLKLK  120
RPSNALTGLR KDKDPQVLLE GVQRATQMMI DSDEEATKRV LPNLDLINLL KGNSNSSIFN  180
FGLHQTDFFS RSGICNFNII PYVGVII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-174599155Putative transcription factor PCF6
5zkt_B7e-174599155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468132e-80AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence.
GenBankHG9755142e-80HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561903.11e-135PREDICTED: transcription factor TCP13-like isoform X1
TrEMBLA0A2G3A5K71e-136A0A2G3A5K7_CAPAN; Transcription factor TCP17
STRINGPGSC0003DMT4000683321e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-37plastid transcription factor 1