PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g08330
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 250aa    MW: 28490.3 Da    PI: 5.2548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g08330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.56.3e-104663499
                SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                kt  l++ +g sWe k+ ++ +s  ++ ++ W +F + ++  +gD+++F+l+++s+f  +v++++k
  CA02g08330  4 KTCLLKTDEGLSWEAKI-VKETSHYFMCEGDWPRFLQHHKFVSGDMLIFYLVEKSTF--HVMLYSK 66
                56779999*********.5666666999999********************988888..8888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.661167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-8466IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-7466IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-9566IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLAKTCLLKT DEGLSWEAKI VKETSHYFMC EGDWPRFLQH HKFVSGDMLI FYLVEKSTFH  60
VMLYSKKSLT NIRHFEELSS SDEEEAAEEK GEVKNVETSR KAKKVKMEPV QLSYLGDKSD  120
SKADNMLDVE KKANEVKMEP VILSDSEEER VDPSSDWGNP CYWHPGGKSN AKADNMLGVK  180
NKAPVKIFRE LIELSDSEEE TVDPFPGSKE VGNTWCSHPG NIDPFIHLVY LICFQSIYAC  240
TRSMRHNEI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558923.11e-160PREDICTED: high mobility group B protein 6-like
TrEMBLA0A1U8FR901e-159A0A1U8FR90_CAPAN; High mobility group B protein 2
TrEMBLA0A2G3A5Q91e-159A0A2G3A5Q9_CAPAN; high mobility group B protein 6-like
STRINGPGSC0003DMT4000341094e-54(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327