PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g08580

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 93aa MW: 10367.7 Da PI: 8.5174

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g08580	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.1	5.4e-07	23	59	18	54
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++L++llP+ + + +s K s + +L+++++YI++L CA02g08580 23 ELVSKLQQLLPEiR-NRRSNKASASKVLQETCNYIRNL 59 56689*****77.899999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.623	5	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-8	20	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-8	21	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSGRRSRQSE GGTSRISDDQ IIELVSKLQQ LLPEIRNRRS NKASASKVLQ ETCNYIRNLH 60 KEVDDLSDRL SQLLSTIDAD SPEAAIIRSL IM*

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	6e-57	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	6e-57	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559055.1	2e-59	PREDICTED: transcription factor PRE6-like
Swissprot	Q9LJX1	2e-41	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A1U8FK00	4e-58	A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBL	A0A2G2XD16	4e-58	A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBL	A0A2G3A645	4e-58	A0A2G3A645_CAPAN; transcription factor PRE6-like
STRING	PGSC0003DMT400017748	2e-56	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	4e-35	bHLH family protein