PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g11990
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 245aa    MW: 27495.7 Da    PI: 5.8243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g11990genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-06183228354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++ n  Er+RR ++++    L+ ++P a      +++ +++L +Av+Y+ksL
  CA02g11990 183 TTSNCSERKRR-KLKKMVKALKGIVPGA-----SRMNTVTVLDEAVRYLKSL 228
                 678999***98.7**************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.607179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-9183233No hitNo description
SuperFamilySSF474591.3E-9183238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4183228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-9184239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7186234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQSNYHFLTQ KPYVSLEDQA AGGNMFGIPP PSVYGTMALP TGLRSSVPFH GFEFQSSEAC  60
PKNFIIFDQT DYRSQIMYHP AMASKFPYPD LNYNSTCFQD GMEKKIANNE NTEVSSYLKE  120
DSDDINALLS LEEEEREEYD EEEVSTARTD ANYGSSSPES YSNYDCQSKK SRTSSFRKCS  180
GSTTSNCSER KRRKLKKMVK ALKGIVPGAS RMNTVTVLDE AVRYLKSLKV EVQKLGVENL  240
KTFA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556257.10.0PREDICTED: transcription factor bHLH144-like
TrEMBLA0A1U8FAB20.0A0A1U8FAB2_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A7K80.0A0A2G3A7K8_CAPAN; transcription factor bHLH144-like
STRINGXP_009595499.11e-143(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-33bHLH family protein