PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g12980

Common Name

AGL2

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28634.3 Da PI: 9.8599

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g12980	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.3	1.6e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ CA02g12980 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP
2	K-box	112.6	4e-37	93	189	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s +ea+a+++qqe++kL+++i nLq+++R+++Ge L L+++eL++Leq++ek+++k+RskKne+l+++ie++qk+e +l+++n++Lr+k++e CA02g12980 93 SNTGSISEANAQYYQQESSKLRAQIGNLQNQNRNYMGEALAALNHRELRNLEQKIEKGISKVRSKKNEMLFAEIEYMQKREVDLHNNNQYLRAKIAE 189 4444599***************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.4E-41	17	76	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.669	17	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.14E-46	18	94	No hit	No description
SuperFamily	SSF55455	3.27E-33	18	90	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	19	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-33	19	39	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.3E-27	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-33	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-33	54	75	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.9E-26	101	187	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.836	103	193	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0048440	Biological Process	carpel development
GO:0048443	Biological Process	stamen development
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVKA TIERYKKACS DSSNTGSISE ANAQYYQQES SKLRAQIGNL 120 QNQNRNYMGE ALAALNHREL RNLEQKIEKG ISKVRSKKNE MLFAEIEYMQ KREVDLHNNN 180 QYLRAKIAET ERAQQHQQQM NLMPGSSSSY ELVPPPQQFD TRNYLQVNGL QTNNHYPRQD 240 QPPLQLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
5f28_A	1e-20	17	85	1	69	MEF2C
5f28_B	1e-20	17	85	1	69	MEF2C
5f28_C	1e-20	17	85	1	69	MEF2C
5f28_D	1e-20	17	85	1	69	MEF2C
6byy_A	1e-20	17	85	1	69	MEF2 CHIMERA
6byy_B	1e-20	17	85	1	69	MEF2 CHIMERA
6byy_C	1e-20	17	85	1	69	MEF2 CHIMERA
6byy_D	1e-20	17	85	1	69	MEF2 CHIMERA
6bz1_A	2e-20	17	85	1	69	MEF2 CHIMERA
6bz1_B	2e-20	17	85	1	69	MEF2 CHIMERA
6c9l_A	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	1e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00609	ChIP-seq	Transfer from AT4G18960	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM565943	0.0	HM565943.1 Capsicum annuum AGAMOUS-LIKE2 (AGL2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311689.1	0.0	floral homeotic protein AGAMOUS
Swissprot	Q40168	1e-170	AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBL	A0A1U8FVA7	0.0	A0A1U8FVA7_CAPAN; floral homeotic protein AGAMOUS isoform X2
TrEMBL	A0A2G3D4W2	0.0	A0A2G3D4W2_CAPCH; Floral homeotic protein AGAMOUS
TrEMBL	E3UT60	0.0	E3UT60_CAPAN; AGAMOUS-LIKE2
STRING	PGSC0003DMT400073134	1e-170	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-123	MIKC_MADS family protein

Publications ? help Back to Top
Pan IL,McQuinn R,Giovannoni JJ,Irish VF Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development. J. Exp. Bot., 2010. 61(6): p. 1795-806 [PMID:20335407] Gimenez E, et al. TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development. Plant Mol. Biol., 2016. 91(4-5): p. 513-31 [PMID:27125648]