PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g13280
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 405aa    MW: 45744.8 Da    PI: 5.9379
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g13280genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.5e-35141072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX..XXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks..Fkkgkkellek 96 
                   Fl+k+ye+++d++ + ++sws++++sf+v+++ +f++++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++   F +g+ +ll++
    CA02g13280  14 FLTKTYEMVDDPSCDAIVSWSSSNKSFIVWNPPNFSRDLLPRYFKHNNFSSFIRQLNTYGFRKIDAEK---------WEFANEDnnFIRGQPHLLKN 101
                   9****************************************************************999.........***998778*********** PP

                   XXXXXX CS
  HSF_DNA-bind  97 ikrkks 102
                   i+r+k 
    CA02g13280 102 IHRRKP 107
                   ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-6110105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3410105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-371199IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3114105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.20.20.1508.8E-4100188IPR013022Xylose isomerase-like, TIM barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDEGACSTNA LPPFLTKTYE MVDDPSCDAI VSWSSSNKSF IVWNPPNFSR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKIDAE KWEFANEDNN FIRGQPHLLK NIHRRKPVHS HSAQNLHGLS  120
SPLTESERQG YKEDIQKLKH ENGSLHLDLQ RHEQDHHGLE LQLQVLTERV QHVEHRQKTM  180
LSALARTLGN SVADLSHMPH LQVNDRKRRL PGNSCLYTES DLEDTRGFSS KALTRKNMNP  240
SSLLTMNTER LDQLESSLTF WEDVLHNVDQ AGIQQNCSLE LDESRSCADS PAISYTQLDI  300
DVGPKASGID MNSEPNANPT PDASEPDDKA AAGTSTIVPT GVNDVFWEQF LTENPVSEVQ  360
SERKDIASKK NENKPVDSAK YWWNMKSVNS LAEQLGHLTP AEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24410519129Heat shock factor protein 1
5d5v_B2e-24410519129Heat shock factor protein 1
5d5v_D2e-24410519129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0144840.0AB014484.1 Nicotiana tabacum NtHSF2 mRNA for heat shock factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559610.10.0PREDICTED: heat stress transcription factor A-4c-like isoform X3
TrEMBLA0A1U8FLK00.0A0A1U8FLK0_CAPAN; heat stress transcription factor A-4c-like isoform X3
STRINGSolyc02g072000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-106heat shock transcription factor A4A