PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g13500

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 306aa MW: 34258.1 Da PI: 5.9927

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g13500	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.5e-31	77	135	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ CA02g13500 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLIVTYSCEHNHP 135 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-32	73	137	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	75	137	IPR003657	WRKY domain
SMART	SM00774	2.4E-36	76	136	IPR003657	WRKY domain
PROSITE profile	PS50811	32.501	77	137	IPR003657	WRKY domain
Pfam	PF03106	2.1E-26	78	135	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEGRFNNFFV SEQDDSENSP ENSSDSPRSA MFNDNKMITS TSSPKRSRRS IEKRVVSVPI 60 KEVEGSKMKG EISMPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD 120 PNMLIVTYSC EHNHPWPASR SNQHNHRTIT PTSCTNNNTK TKTKTIASLT ASPATTTIIT 180 TSDIPILHFE QQKATTDFAV RPSEPNSDEK FVNLGESSLI NAEFGWFSDL VECNSTTILE 240 SPILTQVEVN DFDMSSTLTM QEEDVSLFAD LGELPECSRV FGRGMMERDE ERDRHSLTPW 300 CGTTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-22	66	137	3	79	Disease resistance protein RRS1
5w3x_D	4e-22	66	137	3	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ102364	0.0	DQ102364.1 Capsicum annuum WRKY-A1244 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311687.1	0.0	probable WRKY transcription factor 65
Swissprot	Q9LP56	2e-73	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2G3A7W7	0.0	A0A2G3A7W7_CAPAN; Putative WRKY transcription factor 35
STRING	Solyc02g072190.2.1	1e-172	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	3e-55	WRKY DNA-binding protein 69

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]