PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g14130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 254aa    MW: 29542.3 Da    PI: 4.8762
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g14130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.61.5e-1324114186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++q + +L++a  ++  +l+rg+l++++W+ vs+ +     + ++  r+ +qCk++++ l+k+yk +k+  ++ + + +s++p+f++l+
  CA02g14130  24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQFVSDSVnalhgHTKKSWRTDIQCKNRIDTLKKKYKVEKAKIIESNGTLKSSWPFFERLD 114
                 7*************************************999988889999*******************99999887777789*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2222114No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGEITEFSPQ VTAPSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQFVSDS  60
VNALHGHTKK SWRTDIQCKN RIDTLKKKYK VEKAKIIESN GTLKSSWPFF ERLDLLIGNS  120
DKKVTPVMAS PLPLPLSSPP MGELFCGSCC XGEEDCDEEE EEDMEDMEEM DEESREDDGI  180
RRLAKAIERF GEIYERVEGM KQRQMVELEK QRMQFAKDLE VQRMQLFMDT QVQLERIKHT  240
KRSGSDGIKL TPF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-116HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063492.11e-121trihelix transcription factor ASIL2-like
TrEMBLA0A2G3A8280.0A0A2G3A828_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000264321e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-51sequence-specific DNA binding transcription factors