PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g14180

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 172aa MW: 19774.7 Da PI: 7.8281

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g14180	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	77.8	1.3e-24	53	92	2	41
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWt 41 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryW CA02g14180 53 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWX 92 68999**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-19	52	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-19	55	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	19.806	57	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MAEVQESRIS QGIKLFGATI QVQEIKQAKV HQPTNKVDQD HDNNNNNDQE KRPDKIIPCP 60 RCKSMETKFC YFNNYNVNQP RHFCKGCQRY WXXXXXXXXX XXXXAKPPCG PGPHGDMNGL 120 SDGYFFDVTN HHGNNNNIHQ LEFDGVVAEE DQWHLFQAAK RRRSTSHTQS C*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215388	6e-80	AC215388.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0122E16, complete sequence.
GenBank	HG975514	6e-80	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562030.1	9e-91	PREDICTED: dof zinc finger protein DOF1.5-like
TrEMBL	A0A2G3A880	1e-114	A0A2G3A880_CAPAN; Uncharacterized protein
STRING	XP_009794806.1	8e-75	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7240	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-34	Dof family protein