PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g14320
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 221aa    MW: 24524.2 Da    PI: 9.1381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g14320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08125165954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  CA02g14320 125 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 165
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-14117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14120176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6126165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-6139170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDLQDIAQSL ELGFSSSNIE MIPLQPPVHN SNYLMTSPPS NFSFMGNPIE EPAVPILSSI  60
DEIIASTHGS GNEYSCLQKR NSMEVMREMI FRMAMMQPIH IDPESVKPPK RKNVKISKDP  120
QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAVH YVKFLKKQLQ SLEQAAVNNR  180
PMGSGFSTAM SSPGPMNYNS SSIRSCQTHP SMNSSAQMLS *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153830.0AC215383.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0104A12, complete sequence.
GenBankAC2154490.0AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562217.11e-161PREDICTED: transcription factor HEC1
TrEMBLA0A1U8FSU01e-160A0A1U8FSU0_CAPAN; Transcription factor HEC2
TrEMBLA0A2G2XHC71e-160A0A2G2XHC7_CAPBA; Transcription factor HEC2
TrEMBLA0A2G3A8791e-160A0A2G3A879_CAPAN; transcription factor HEC1
TrEMBLA0A2G3C4861e-160A0A2G3C486_CAPCH; Transcription factor HEC2
STRINGPGSC0003DMT4000103441e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-43bHLH family protein