PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g14640
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 328aa    MW: 36067 Da    PI: 10.0991
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g14640genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32256313359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp+++++tYegeHnh+
  CA02g14640 256 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERASDDPTMLIVTYEGEHNHS 313
                 99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.6E-19206252IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.6E-34243313IPR003657WRKY domain
PROSITE profilePS5081131.582249315IPR003657WRKY domain
SuperFamilySSF1182902.75E-27251313IPR003657WRKY domain
SMARTSM007741.2E-38254314IPR003657WRKY domain
PfamPF031061.0E-27256312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAVDLMMDYR NTSNSSSNNC INFVTKLEEK AVVQEAASGL ESVEKLIRML SRNKSPQIQQ  60
QNKSPMEIEL VADAAVTKFK KVISLLDRNR TGHARFRRAP LAATTSPSPT NCNKDIVDTK  120
VYSPTPIQQV PLVSYEHYNP LVPPKTISFS YSPEMSRTNS FNISSLTGDT ESKQHSSSSA  180
AFQITNLSSQ VTNSAGKPPL SSSSLKRKCS LSENAVSGKC SGPSGRCHCS KRRKLRLKRV  240
IRVPAISMKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERASDDPT  300
MLIVTYEGEH NHSLSVAETS SLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-23242314273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561025.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX04e-94WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U8FQL90.0A0A1U8FQL9_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A8490.0A0A2G3A849_CAPAN; probable WRKY transcription factor 7
STRINGPGSC0003DMT4000642560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-79WRKY DNA-binding protein 7