PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g16000
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 202aa    MW: 23373.9 Da    PI: 9.4203
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g16000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33311262102
                   HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   Fl+k+y++le    ++++++++sw+ +g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk+ +++         weF+h++F+kg ++ll
    CA02g16000  31 FLSKTYDLLEeqeeESSINKVVSWNGEGSGFVVWCPAEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKIASKR---------WEFQHEKFQKGCRHLL 118
                   9*********555555999**************************************************999.........**************** PP

                   XXXXXXXX CS
  HSF_DNA-bind  95 ekikrkks 102
                   ++i rkk 
    CA02g16000 119 SEITRKKY 126
                   *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-3523118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-4327124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-2828124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.2E-3031124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-123558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-127385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-128698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MATDAIPAPV SDRNLSRKMG RSSRMKCPAP FLSKTYDLLE EQEEESSINK VVSWNGEGSG  60
FVVWCPAEFS EVMLPKYFKH NNFSSFIRQL NTYGFKKIAS KRWEFQHEKF QKGCRHLLSE  120
ITRKKYEPSA FPTYLNPSAK NIILGSTKEE INTSRQLLME ENQNLKREKM ELQMQIAHFK  180
ALEVKLLQCL TQCMESPHNK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A2e-18271247110Heat shock factor protein 2
5hdk_B2e-18271247110Heat shock factor protein 2
5hdk_C2e-18271247110Heat shock factor protein 2
5hdk_D2e-18271247110Heat shock factor protein 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265133e-70AC226513.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0005F12, complete sequence.
GenBankHG9755143e-70HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561996.11e-150PREDICTED: heat stress transcription factor B-2a-like isoform X1
TrEMBLA0A1U8FS281e-148A0A1U8FS28_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A8F81e-148A0A2G3A8F8_CAPAN; heat stress transcription factor B-2a-like isoform X1
STRINGSolyc02g078340.2.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-41heat shock transcription factor B2A