PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g16060

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LSD

Protein Properties

Length: 143aa MW: 15851.5 Da PI: 9.7537

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g16060	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.2e-13	53	77	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+tV CA02g16060 53 CGSCRQLLSYPQGAKLVKCPCCQTV 77 ************************9 PP
2	zf-LSD1	46.3	6.8e-15	91	115	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ CA02g16060 91 CGGCAVLLMYPYGAPSVRCSSCRHM 115 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.2E-16	50	80	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-11	53	77	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.5E-10	88	116	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-12	91	114	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MEMGSKQEGT KNEEVRPQIE KQPMPYLRQM KPIMPQSSSH AATVSAEMGQ MVCGSCRQLL 60 SYPQGAKLVK CPCCQTVNLV LEAQYVGQVK CGGCAVLLMY PYGAPSVRCS SCRHMTKIGA 120 HNRRPPQSVQ QPRRRHPSYQ VR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-42	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559480.1	1e-100	PREDICTED: uncharacterized protein LOC107859099 isoform X3
Refseq	XP_016559482.1	1e-100	PREDICTED: uncharacterized protein LOC107859099 isoform X5
Swissprot	O65426	8e-35	LOL2_ARATH; Protein LOL2
TrEMBL	A0A1U8FJS1	1e-98	A0A1U8FJS1_CAPAN; uncharacterized protein LOC107859099 isoform X5
TrEMBL	A0A1U8FL73	2e-98	A0A1U8FL73_CAPAN; Protein LOL5
TrEMBL	A0A2G3A8K2	2e-98	A0A2G3A8K2_CAPAN; uncharacterized protein LOC107859099 isoform X3
STRING	PGSC0003DMT400076422	8e-88	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-32	lsd one like 2