PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g16250
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 186aa    MW: 21244.2 Da    PI: 7.3217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g16250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-102270655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                + +E++RR+++++ + +L +l+ ++  ++sk   s  + Le+A +YIk+Lq
  CA02g16250 22 KTIEKNRRSQMKDLYMKLNSLVHHD--QHSKEfSSLPDQLEEAANYIKKLQ 70
                789*********************6..377779999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.3121669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-82089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-72270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-92291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-42474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEQTYCNKPT SSSLSCKTAD RKTIEKNRRS QMKDLYMKLN SLVHHDQHSK EFSSLPDQLE  60
EAANYIKKLQ IDLEKMRQKK EGLTAASTVN SRSMSNNNAG RTIIERTLPL PHIEIHIVDS  120
ALEVLLITGS DYHYMFNDII RMLHEDGVQV INASYTAVGD SIYHSIHSKV QLFIFPLDSM  180
FDRIQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562068.11e-124PREDICTED: uncharacterized protein LOC107861223
TrEMBLA0A1U8G0C11e-123A0A1U8G0C1_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A8M51e-123A0A2G3A8M5_CAPAN; uncharacterized protein LOC107861223
STRINGSolyc02g078130.2.11e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-38bHLH family protein