PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g16840
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 381aa    MW: 43535 Da    PI: 4.7656
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g16840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.66.3e-31801722103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+ye+l d ++k+lisw++ng+sf+++d+++fa +vLp++F+h+n++SF+ QLn YgFkkv+ ++          eF+h++F++gk + l+kik
    CA02g16840  80 FVLKIYEMLADIQFKSLISWTNNGTSFIIHDNHRFAVEVLPRFFRHNNLSSFICQLNCYGFKKVNWDK---------FEFRHEWFQRGKGQWLKKIK 167
                   9****************************************************************999.........67****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rk s+
    CA02g16840 168 RKPSK 172
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.9E-3576169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-2978169IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.09E-2778169IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.6E-1380103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2680169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-13118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-13131143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEIDRGKGKM TEIDNIVEML GEGYEGLEDV HIDISMLEYD DDDKQCNEVI HGNAVTATAR  60
ELLFSSSSNR RNSQKQGCPF VLKIYEMLAD IQFKSLISWT NNGTSFIIHD NHRFAVEVLP  120
RFFRHNNLSS FICQLNCYGF KKVNWDKFEF RHEWFQRGKG QWLKKIKRKP SKSQMNEQLT  180
DRQGIDETAA FTIGKEIEEI RAEQAAMREE IIVLQRQLDM FEKEMEDINQ AGDNLSSKKA  240
KICMLLFNTL LGQAQDGEVE DGVETRGKGN RGEKRKVQVE GELEGDNEGS KKIAGAADFK  300
SDSYLGKMLM DEMNLNNLAH EQPDNFLESE ELAGSSTFWI DYVEKMDHKT IFSGAGPAFS  360
QSQESHLEPL QYTYLLVIMS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-208016910110Heat shock factor protein 1
5hdn_A3e-208016910110Heat shock factor protein 1
5hdn_B3e-208016910110Heat shock factor protein 1
5hdn_C3e-208016910110Heat shock factor protein 1
5hdn_D3e-208016910110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169LKKIKRKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153652e-97AC215365.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0031A21, complete sequence.
GenBankAC2154022e-97AC215402.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0161P02, complete sequence.
GenBankHG9755142e-97HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065476.10.0heat stress transcription factor B-3-like
TrEMBLA0A2G3A8X40.0A0A2G3A8X4_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000917900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140991213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-31heat shock transcription factor A3