PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g17520
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 240aa    MW: 27413.7 Da    PI: 8.4416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g17520genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-065072729
                HHHHHHHHHHHHHHHHHHCTSCC CS
         HLH  7 erErrRRdriNsafeeLrellPk 29
                 +Er+RR+++ +++ eLr+l+P+
  CA02g17520 50 NAERKRRQKLSERLLELRSLVPN 72
                58********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-842108No hitNo description
SuperFamilySSF474591.44E-1043121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.57943104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-944121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0149110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVVIKCGKME FPKSPFDDSH MSEEREVRGR TDKRKTIDGE VKEYKSKNLN AERKRRQKLS  60
ERLLELRSLV PNITNAMNQN PFTNFFIQFS KTIITDAITY IRELQTNVDY LSEQLLEMEA  120
THAEQLETKN EVIIDTAEDM GKWGIEPEVQ VAHIGPTKLW IKIVCQKKRG GFTKLMETMN  180
VLGFDLNDTS VTASRGALLV TASVEVGETY VKKMNFLVAM KNYCLNMSGF VVVEKRYLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERKRRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754419e-86HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562081.11e-134PREDICTED: transcription factor DYT1-like
TrEMBLA0A1U8FSD11e-133A0A1U8FSD1_CAPAN; transcription factor DYT1-like
STRINGXP_009773859.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-29bHLH family protein