PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g18810
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 490aa    MW: 53548.9 Da    PI: 8.3152
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g18810genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-1556100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a k++G   W++I +++  ++t+ q++s+ qk+
       CA02g18810  56 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVS-TKTAVQIRSHAQKF 100
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.2851105IPR017930Myb domain
SuperFamilySSF466894.11E-1651104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1654103IPR006447Myb domain, plants
SMARTSM007172.2E-1255103IPR001005SANT/Myb domain
PfamPF002497.8E-135699IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-95696IPR009057Homeodomain-like
CDDcd001679.35E-1058101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
DQSGESGVDS IHSSRNQISS DVGASSTRSI KLKEQVASAD EYAPKVRKPY IITKQRERWT  60
EEEHKKFLEA LKLYGRAWRR IEEHVSTKTA VQIRSHAQKF FSKVVRESNN GDANSVKPIE  120
IPPPRPKRKP MHPYPRKLAT PVIIGTPVPE KSTRSLTPNV SMSEQENQSP TSVLSVHGSD  180
ALGTVDSSKR LGSASPISSA GDGNGNSGDF VLSEPPNSIL EDSSSPVQAN AKTNPENQTF  240
VKLELFPQDD DFVQEGSAET SSTQCLKLFG KTVLFTESQK PSCPTPGPCK IETGLNDEAS  300
LPAVLWNVMP MKFTAADSEC ASRTLTLGTP SPFYILPSQN ENKRPTGCAS STLLPWGSSC  360
ASASFSCIQV LNPIPVKGRP IFNDRDLEDK QNQKEGSSTG SNTEPVSAET GGEKNMDIET  420
QSSRHPLEKM GKDRSSFRPR ETFSLVQRAS STKRIKGFIP YKRCLTESGI NSTTLSGEER  480
EEQRTRLCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461216.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLA0A2G3A9B20.0A0A2G3A9B2_CAPAN; Protein REVEILLE 2
STRINGXP_009613640.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-60MYB_related family protein