PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g19640
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 348aa    MW: 39550.1 Da    PI: 8.3905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g19640genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12210235126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  CA02g19640 210 YQPDICKDYKETGYCGYGDSCKFMHD 235
                 66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-9208240IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878209237IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10210235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12210240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.2E-14270328IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.3E-8286328No hitNo description
SuperFamilySSF578501.66E-13286329No hitNo description
SMARTSM001845.7E-5287324IPR001841Zinc finger, RING-type
CDDcd001627.67E-9287328No hitNo description
PROSITE profilePS5008910.571287325IPR001841Zinc finger, RING-type
PROSITE patternPS005180302311IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKRKTLQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FKKPSKGKNI RKRPAVDEGE  60
NDDAEGDSSV IYTKKKSAVN NKLHFSTGPS KSNKDTESSV DSKASRFHFE SSKEIQVQND  120
SRATATLETE TEFSKDARAI RERALKQAEE ALKGKSKAGG DEKLYKGINQ YTDYKAGLRR  180
EHTISSEKAG GAHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK  240
SGWQMEKEWE EAEKERKRKL ALGMLDEDDE DAEKSDEDDD DALPFACFIC REPFVDPVVT  300
KCKHYFCEHC ALKHHAKNKK CYVCNQPTLG IFNTAFEIRK KMAAQGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-674134219317RING finger protein 113A
5z58_M5e-674134219317RING finger protein 113A
6ff4_t5e-674134219317RING finger protein 113A
6ff7_t5e-674134219317RING finger protein 113A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560307.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_016560308.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-154C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1U8FV530.0A0A1U8FV53_CAPAN; zinc finger CCCH domain-containing protein 1
STRINGXP_009609000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-144C3H family protein