PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g19960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WOX
Protein Properties Length: 276aa    MW: 30700.2 Da    PI: 5.8648
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g19960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox696.1e-2295155257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 r+R+t+t+ ql++Le+ Fe+ n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  CA02g19960  95 RQRWTPTPMQLQILERIFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 155
                 89*****************99**************************************97 PP
2Wus_type_Homeobox101.75e-3395157365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
         CA02g19960  95 RQRWTPTPMQLQILERIFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 157
                        89***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-1891162IPR009057Homeodomain-like
PROSITE profilePS5007115.33791156IPR001356Homeobox domain
SMARTSM003892.1E-1593160IPR001356Homeobox domain
SuperFamilySSF466891.71E-1993160IPR009057Homeodomain-like
CDDcd000861.78E-1595157No hitNo description
PfamPF000469.8E-2095155IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEWDKQQQQP PAQPQTAEEL NGGGGSSGGG MFVKVMTDEQ MEVLRKQIAV YATICEQLVD  60
LHKSMATQHD LAGVRLGNLY CDPLVTSAGH KITGRQRWTP TPMQLQILER IFEQGNGTPS  120
KQKIKEITSE LSQHGQISET NVYNWFQNRR ARSKRKQQVA ATNNNESEVE TEVESPNEKK  180
TKPEDLQSSH MPTSVAEDLG YQNPEVSSGM HTLDPRTSKP EPMFPSDGSS KSAGSYGQMS  240
FYGMSNPRMD QIMGKMEVPG SYHPYLHAED YNMTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154500.0AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560370.10.0PREDICTED: WUSCHEL-related homeobox 8
SwissprotQ5QMM36e-91WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1U8FNS50.0A0A1U8FNS5_CAPAN; WUSCHEL-related homeobox 13
TrEMBLA0A2G3A9T00.0A0A2G3A9T0_CAPAN; WUSCHEL-related homeobox 8
TrEMBLA0A2G3D7980.0A0A2G3D798_CAPCH; WUSCHEL-related homeobox 13
STRINGSolyc02g082670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-80WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]