PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g20090
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 151aa    MW: 17439.4 Da    PI: 8.6371
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g20090genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1646125587
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 +++++++++++l+lpk f++++g+    + +++l  e+ r W+v l  +  ++r+ +++GW +F kang+++gD+ +F+l+++
  CA02g20090  46 TIKHYTFTKAILCLPKGFTKSNGLMD--KHEMILVEEKQRLWTVWL-GKMDPRRFGIKSGWPQFRKANGVQVGDTYMFELTDN 125
                 56899*****************7773..348***************.6888889*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1936133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1938133IPR015300DNA-binding pseudobarrel domain
CDDcd100175.58E-1341135No hitNo description
PROSITE profilePS5086312.36542136IPR003340B3 DNA binding domain
SMARTSM010199.8E-1043136IPR003340B3 DNA binding domain
PfamPF023623.6E-1446127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MFLFSSFLGY FTVIKDLRHK ALDMTTPISQ IPTSTSADAN PHFISTIKHY TFTKAILCLP  60
KGFTKSNGLM DKHEMILVEE KQRLWTVWLG KMDPRRFGIK SGWPQFRKAN GVQVGDTYMF  120
ELTDNGTIPI MHVHCECFFI FLWFNDYLVC *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-49HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168742.16e-55PREDICTED: B3 domain-containing protein REM17-like
RefseqXP_025888305.13e-52putative B3 domain-containing protein REM15
TrEMBLA0A2G3A9T31e-109A0A2G3A9T3_CAPAN; Uncharacterized protein
STRINGSolyc08g006220.2.12e-56(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-12B3 family protein