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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA02g20100 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 73aa MW: 8558.71 Da PI: 9.0884 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 37.7 | 7e-12 | 32 | 71 | 1 | 40 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
kfY +YA++ GF+vrk++ ++s+ +++i++++fvCske +
CA02g20100 32 KFYLDYAHRSGFNVRKNRISRSRIDKSIIDQEFVCSKEEF 71
6************************************976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.8E-9 | 32 | 71 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 73 aa Download sequence Send to blast |
MAVVPFTPQF GDEESRVPYI SMKFQSPDVA YKFYLDYAHR SGFNVRKNRI SRSRIDKSII 60 DQEFVCSKEE FR* |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975442 | 4e-42 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025884696.1 | 3e-31 | protein FAR1-RELATED SEQUENCE 11-like | ||||
| Refseq | XP_025884722.1 | 3e-30 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A2G3A9R2 | 1e-45 | A0A2G3A9R2_CAPAN; Uncharacterized protein | ||||
| STRING | Solyc02g092170.1.1 | 9e-32 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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