PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g20110
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 135aa    MW: 15629 Da    PI: 8.8464
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g20110genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.8e-171495599
                -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      + ++ l++p  f+ ++ +g    +++ ++  + g+sW vk+  ++++    +++GW  Fv++++L+ gD ++F+++g++ef   v++f++
  CA02g20110 14 I---QKGFKHGLTIPTGFL-KYlKGR--HQIEHVVLRSGGKSWLVKV--KGCR----FKAGWAAFVEEHDLQLGDLLIFRHEGDMEF--EVSIFDS 95
                3...4445556********.564666..5568888899*********..6666....9***********************999999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-22398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-22398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.294796IPR003340B3 DNA binding domain
CDDcd100171.06E-16894No hitNo description
SMARTSM010191.9E-131096IPR003340B3 DNA binding domain
PfamPF023622.1E-131395IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MKIPPKKPHF FKPIQKGFKH GLTIPTGFLK YLKGRHQIEH VVLRSGGKSW LVKVKGCRFK  60
AGWAAFVEEH DLQLGDLLIF RHEGDMEFEV SIFDSSHCDR EYAEYLQEEE GCDNVEETSK  120
NFKFKGNIFR IRLS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548822.12e-86PREDICTED: B3 domain-containing protein REM8-like isoform X3
RefseqXP_016548828.12e-86PREDICTED: B3 domain-containing protein REM8-like isoform X3
TrEMBLA0A2G3A9V42e-85A0A2G3A9V4_CAPAN; Uncharacterized protein
STRINGSolyc08g006240.1.15e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-21B3 family protein