PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g21790

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 983aa MW: 105665 Da PI: 5.5848

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g21790	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.1e-06	959	982	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ f+++G Ck G+ C + H+ CA02g21790 959 GQRICK-FYESGRCKKGAACDYLHP 982 6899.8899***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55277	3.14E-14	162	222	IPR003169	GYF domain
PROSITE profile	PS50829	13.867	170	223	IPR003169	GYF domain
CDD	cd00072	9.51E-15	170	226	No hit	No description
SMART	SM00444	4.4E-9	171	225	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	6.1E-14	172	223	IPR003169	GYF domain
Pfam	PF02213	1.7E-9	173	214	IPR003169	GYF domain
SuperFamily	SSF90229	5.18E-6	957	981	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.075	957	982	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MQSLEAEILR LNHLRDRAIE NIDLEHEDFL DCSTLRECIE KLELLKTPKE RQRRLMEIPE 60 VHADPKMNPD YESEGEHNDK RNVEHPAPRY TRISRRDEKL VSLGSRVKEE GSIMARCRSS 120 EKREACGTNI FDKKGNQFTV EQAVDRSGSE ASIASLSTAN SSSVNSCETD KLWHYRDPAK 180 RIQGPFSVMQ LRKWNTSGLF PPDMRIWTNH EHEDSVLLTN ALKGLFHKEF QVHDKTSSQS 240 WEPAGLDSRT SVRWTESATG SRGECGKKEA PRHLHNANYY SNSNTQFTRT SGWLPPSFQQ 300 CVESLKANNS CFDKPQLSSS PSSIQREVIL ALPRQEKGQE NDNCHSVAAH GTQNSHKSTS 360 CYAQSNSQNL GPSSGQNQGS FTSNKCSINL DCGSTFASAT QSRDSFEQKG KMNFPDLPSP 420 TPETRYGDIE AQAAEKLLLL SSVIPFCGSD IHDLPSPTPI SNGEAQGGHA DENKESGPSS 480 LPDCEPQGGH AVENKESGLS SLPVQESGQR WSSASSPVVG GPHLREIADE WGRSSPAAKP 540 STEEWDSGVV SVSSQKPADT VGDHVATPPS HGDQLTAKPS TDHPGLVSVS SLKPADTVGD 600 HVATPPANGD QLTAKPSTDH PGLVSISSLK PADAVGDLVA TPPSTADQLT AKPSAEEWDG 660 LVSVSSLKPA EVVGDHVATP TSNADQLNHT SPSHPMSNFF GEPIEFSTLA EESVSDLLAE 720 VDALESQNQN GMGSPTSAMR CSEGMIPGCK TGYFSPMEEL SPTHDPVRSD ALSSTGDLQL 780 PCQSTVTDET VGASRADAFD PLRRSAGNSS TSSEGETKSA DVLFSQGDVG SVIPAPCTTS 840 QTTAFSAMGR STGFEGMTNG RGAAPGNQNW GGPVQGYANF GYGSSTGAAW GNSHMNRGAP 900 FSGNPMWDSQ RRYAGERSGG PRDWALQGGE SGFGRGRSSW NNRQQPYGGG GYSRPPPKGQ 960 RICKFYESGR CKKGAACDYL HP*

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MQSLEAEILR LNHLRDRAIE NIDLEHEDFL DCSTLRECIE KLELLKTPKE RQRRLMEIPE  60
VHADPKMNPD YESEGEHNDK RNVEHPAPRY TRISRRDEKL VSLGSRVKEE GSIMARCRSS  120
EKREACGTNI FDKKGNQFTV EQAVDRSGSE ASIASLSTAN SSSVNSCETD KLWHYRDPAK  180
RIQGPFSVMQ LRKWNTSGLF PPDMRIWTNH EHEDSVLLTN ALKGLFHKEF QVHDKTSSQS  240
WEPAGLDSRT SVRWTESATG SRGECGKKEA PRHLHNANYY SNSNTQFTRT SGWLPPSFQQ  300
CVESLKANNS CFDKPQLSSS PSSIQREVIL ALPRQEKGQE NDNCHSVAAH GTQNSHKSTS  360
CYAQSNSQNL GPSSGQNQGS FTSNKCSINL DCGSTFASAT QSRDSFEQKG KMNFPDLPSP  420
TPETRYGDIE AQAAEKLLLL SSVIPFCGSD IHDLPSPTPI SNGEAQGGHA DENKESGPSS  480
LPDCEPQGGH AVENKESGLS SLPVQESGQR WSSASSPVVG GPHLREIADE WGRSSPAAKP  540
STEEWDSGVV SVSSQKPADT VGDHVATPPS HGDQLTAKPS TDHPGLVSVS SLKPADTVGD  600
HVATPPANGD QLTAKPSTDH PGLVSISSLK PADAVGDLVA TPPSTADQLT AKPSAEEWDG  660
LVSVSSLKPA EVVGDHVATP TSNADQLNHT SPSHPMSNFF GEPIEFSTLA EESVSDLLAE  720
VDALESQNQN GMGSPTSAMR CSEGMIPGCK TGYFSPMEEL SPTHDPVRSD ALSSTGDLQL  780
PCQSTVTDET VGASRADAFD PLRRSAGNSS TSSEGETKSA DVLFSQGDVG SVIPAPCTTS  840
QTTAFSAMGR STGFEGMTNG RGAAPGNQNW GGPVQGYANF GYGSSTGAAW GNSHMNRGAP  900
FSGNPMWDSQ RRYAGERSGG PRDWALQGGE SGFGRGRSSW NNRQQPYGGG GYSRPPPKGQ  960
RICKFYESGR CKKGAACDYL HP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560551.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X2
TrEMBL	A0A1U8FMR0	0.0	A0A1U8FMR0_CAPAN; zinc finger CCCH domain-containing protein 44 isoform X2
STRING	XP_009600608.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2181	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	9e-34	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding