PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g21890
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 170aa    MW: 20040.5 Da    PI: 10.18
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g21890genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81.1e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien++nrqvt+skRrngi+KKA EL vLCda++ +i+fsst k +ey s
  CA02g21890  9 KKIENSTNRQVTYSKRRNGIFKKARELTVLCDAKIFIIMFSSTKKYHEYTS 59
                68***********************************************75 PP
2K-box61.72.8e-2174147174
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                 yq++ g++ +++++e++q++l++Lk  +++L+re+R++ Ged++ L+l+eL qL++ + +s+ +iR++K  +ll
  CA02g21890  74 YQSTLGVDIWSTQYEKMQENLKRLKVINNKLRREIRQRTGEDMSGLNLQELCQLQESISESVAEIRERKVIILL 147
                 78888999*************************************************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
CDDcd002653.60E-35283No hitNo description
SuperFamilySSF554551.05E-34297IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-1485146IPR002487Transcription factor, K-box
PROSITE profilePS512979.89487169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRGKIQIKK IENSTNRQVT YSKRRNGIFK KARELTVLCD AKIFIIMFSS TKKYHEYTSP  60
NTTYVMTKKM LDQYQSTLGV DIWSTQYEKM QENLKRLKVI NNKLRREIRQ RTGEDMSGLN  120
LQELCQLQES ISESVAEIRE RKVIILLFTI YSYILEVMLI MNIIYPFMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-16185187MEF2 CHIMERA
6byy_B7e-16185187MEF2 CHIMERA
6byy_C7e-16185187MEF2 CHIMERA
6byy_D7e-16185187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8534391e-151HQ853439.1 Iochroma cyaneum MADS box transcription factor (TM6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560565.13e-95PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
RefseqXP_016560566.17e-96PREDICTED: floral homeotic protein PMADS 1-like isoform X2
SwissprotQ003J23e-66TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1U8FMS52e-94A0A1U8FMS5_CAPAN; floral homeotic protein PMADS 1-like isoform X2
TrEMBLA0A1U8FPC18e-94A0A1U8FPC1_CAPAN; floral homeotic protein DEFICIENS-like isoform X1
STRINGPGSC0003DMT4000091125e-85(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]