PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g21940

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 206aa MW: 22315.4 Da PI: 8.1197

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g21940	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.5	2.1e-69	6	167	3	155
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.........kskkqsalsstkl 91 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thv+stWvpaakrrerq+qla++++++++++ ++++++++r+l + ++s+l +t++ CA02g21940 6 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQNQLATLQHHQEEEQhQQQQQQETRQLhrdnpkrlrEDPSASSLVCTRI 104 5789***************************************************999888774333333333335566666544455667777776 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 + s++ le+ ++P++v s+avf+cvr+ssvdd+e+++aYqtav+igGhvfkGiLydqG+e++ CA02g21940 105 LPS-STSGLEVGNFPAKVTSNAVFHCVRMSSVDDAEDQFAYQTAVNIGGHVFKGILYDQGPENQ 167 665.455899999**********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-66	8	165	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-27	10	52	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.3E-27	117	164	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MMRSGGGGIS CQDCGNQAKK DCQHMRCRTC CKSRGFQCQT HVRSTWVPAA KRRERQNQLA 60 TLQHHQEEEQ HQQQQQQETR QLHRDNPKRL REDPSASSLV CTRILPSSTS GLEVGNFPAK 120 VTSNAVFHCV RMSSVDDAED QFAYQTAVNI GGHVFKGILY DQGPENQYMA AGESSSGGGS 180 ASHQHNLIGA AGTSTSAATS GXCST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331912	0.0	KC331912.1 Solanum lycopersicum expression of terpenoids 3 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560706.1	1e-148	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	4e-78	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2G3AAR0	1e-150	A0A2G3AAR0_CAPAN; Protein SHI RELATED SEQUENCE 5
STRING	Solyc02g084680.2.1	1e-102	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-67	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]