PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g22950
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 356aa    MW: 38184.7 Da    PI: 5.4152
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g22950genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_179.54.1e-25256318163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN++Lk+el+ l++e++kl+se+
  CA02g22950 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALTNENHSLKDELQGLSEECEKLTSEN 318
                 89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-252295IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.1E-21251315No hitNo description
PfamPF001706.0E-23256318IPR004827Basic-leucine zipper domain
SMARTSM003389.5E-24256320IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.392258321IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.81E-12259315No hitNo description
CDDcd147021.21E-24261311No hitNo description
PROSITE patternPS000360263278IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MCRAHIYLCV GSLLTSFLMF GQETPTAPSY PDWSSSMQAY YSAGATPPFF ASPVASPAPH  60
PYLWGGQHPL MPPYGTPVPY PALYPPAGVY AHPNMATPSP NTAQANPESD GKGTEGKDRN  120
SSKKLKASSS SKAGDNGKVT SGSGNDGATQ SDESRSEGTS DTNDENDNHE FAANKKGSFD  180
QMLADGTSAQ NNPATVNYPT SIHGNPVTVP ATNLNIGMDV WNASSAGPGA IQMQPNASGP  240
VVGHEGRIND QWMQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQRRV EALTNENHSL  300
KDELQGLSEE CEKLTSENNS IKEELARWCG PDAVSKLESS GTNATHAQSN VEEAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278RRSRLRK
2272279RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7302460.0KJ730246.1 Nicotiana tabacum G-box-binding factor 1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560581.10.0PREDICTED: G-box-binding factor 1-like isoform X1
RefseqXP_016560583.10.0PREDICTED: G-box-binding factor 1-like isoform X3
RefseqXP_016560584.10.0PREDICTED: G-box-binding factor 1-like isoform X3
SwissprotP427741e-103GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A2G3AA980.0A0A2G3AA98_CAPAN; G-box-binding factor 1
STRINGXP_009803268.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-89G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]