PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g23810
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 333aa    MW: 37546.8 Da    PI: 6.7797
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g23810genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.51.4e-15257281226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ktelC+ +++tGtC+yG++C+FaHg
  CA02g23810 257 KTELCNKWQETGTCPYGENCQFAHG 281
                 9***********************8 PP
2zf-CCCH19.41.8e-06294319126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte Cr  +++  C+yG rC+F H+
  CA02g23810 294 YKTEVCRMVLAGDMCPYGHRCHFRHS 319
                 9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18251288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-11252287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117255283IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8255282IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-12257281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-12289322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-9289322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188293321IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5293320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQNENPNPDG VNTSTVDAAT VFSDTASPHL ADNPFLSPTS THQFDSSEFI PNFYSTFSRS  60
SNSPSLTSFD DMDDLVSDRR FNQASYILEY QQLYNRYTLC LAHLQESIKE VEALHQENES  120
LRLVNTDLDR RLSLLTQATI QNCLLSDFNR FGMGVNRDAQ ISDSRPPNIR QGIVEPKRPE  180
RRNTERVSLP KSISVRSSGY LKLKAQDGNN GGPSQAKAKQ KSAAPPLTES QQRVYVPGGK  240
KTEEAIEFDV YNQGMLKTEL CNKWQETGTC PYGENCQFAH GITELRPVIR HPRYKTEVCR  300
MVLAGDMCPY GHRCHFRHSL TEEERRTGPG LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-22257322570Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153540.0AC215354.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0011O23, complete sequence.
GenBankAC2154110.0AC215411.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0180C05, complete sequence.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562169.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ9C9N38e-72C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8G2G50.0A0A1U8G2G5_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AAU40.0A0A2G3AAU4_CAPAN; zinc finger CCCH domain-containing protein 14 isoform X1
STRINGPGSC0003DMT4000785830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-73C3H family protein