PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g23820
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 132aa    MW: 15563.3 Da    PI: 10.2781
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g23820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1184.5e-3761072100
       NF-YC   2 lksfwekqiek..atdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                 l  fw++q e+  ++d+k +helP++ri++ +k++++vkm+sa++ vll+ka e+filelt r+w+++e+ krrtlk++dia a+ + + fdfl divp
  CA02g23820   6 LSCFWKRQKEEilHSDLKrKHELPISRIRRAMKSNDQVKMVSAHSTVLLAKAIEMFILELTRRAWMQSEQEKRRTLKRCDIARAIRNEELFDFLSDIVP 104
                 779*****9983347999899*****************************************************************************9 PP

       NF-YC  98 rde 100
                  ++
  CA02g23820 105 LQN 107
                 876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-2418107IPR009072Histone-fold
PfamPF008081.8E-152790IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.2E-2928104IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MLKEELSCFW KRQKEEILHS DLKRKHELPI SRIRRAMKSN DQVKMVSAHS TVLLAKAIEM  60
FILELTRRAW MQSEQEKRRT LKRCDIARAI RNEELFDFLS DIVPLQNYKV GLYIRISSIM  120
SSQDELVVLS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-26610419118HapE
4g92_C1e-26610419118HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983TLKRC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560804.14e-75PREDICTED: nuclear transcription factor Y subunit C-4-like isoform X7
TrEMBLA0A2G3D8587e-74A0A2G3D858_CAPCH; Nuclear transcription factor Y subunit C-2
STRINGSolyc02g091030.2.11e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139181113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-34nuclear factor Y, subunit C2