PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g24420

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 343aa MW: 38733.7 Da PI: 4.9077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g24420	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	173	216	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L CA02g24420 173 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYVKEL 216 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.408	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	170	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-9	173	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-12	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-4	174	221	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-15	174	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MELTQQDFLE ELLAPRIESW NSNSSSTFAS GVKEFFPNAW NIESSTFYQE NPDFIPSNSS 60 LLDLMMMSPS ESSFPCPDFQ ESYPFLDSST YNNQLECNNR ALVGEGFISN TDHFLGHYGQ 120 QEDSVSCFNI NKVVKMEEAA TSRINSHVTD IVGQEKKSGN KVKKVEGQPS KNLMAERRRR 180 KRLNDRLSML RSVVPKISKM DRTSILGDTI DYVKELLDKI SKLREENEMQ DEIKDIKFMG 240 NFKELKPNEA FVRNPPKFDV ERRNGEETSI EMCCATKPGL LLSTVSTMET LGLEVQQCVV 300 SCFSDFSMRA SCSEATEHRT ILGSEDVKQA LFKTAGYGGR CL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MELTQQDFLE ELLAPRIESW NSNSSSTFAS GVKEFFPNAW NIESSTFYQE NPDFIPSNSS  60
LLDLMMMSPS ESSFPCPDFQ ESYPFLDSST YNNQLECNNR ALVGEGFISN TDHFLGHYGQ  120
QEDSVSCFNI NKVVKMEEAA TSRINSHVTD IVGQEKKSGN KVKKVEGQPS KNLMAERRRR  180
KRLNDRLSML RSVVPKISKM DRTSILGDTI DYVKELLDKI SKLREENEMQ DEIKDIKFMG  240
NFKELKPNEA FVRNPPKFDV ERRNGEETSI EMCCATKPGL LLSTVSTMET LGLEVQQCVV  300
SCFSDFSMRA SCSEATEHRT ILGSEDVKQA LFKTAGYGGR CL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	182	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	5e-51	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560870.1	0.0	PREDICTED: transcription factor bHLH93 isoform X2
Swissprot	Q9LSL1	3e-78	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2G3AB36	0.0	A0A2G3AB36_CAPAN; Transcription factor bHLH93
STRING	XP_009596776.1	1e-170	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-80	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]