PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g24530
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 336aa    MW: 38082.1 Da    PI: 7.4493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g24530genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14159206355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f eL  +lP +     kK++Ka+iLe+A++++k+Lq
  CA02g24530 159 QHHIIAERKRREKLSQRFVELSAILPDL-----KKVDKASILEQAINHVKELQ 206
                 5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.51156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-13159210No hitNo description
SuperFamilySSF474591.96E-17159225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16160221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDSSSLRWFS RTEEGAYCSN KNKSIDDFTT QQSTISEDQD TTRELSLSPD SNRANSPPYF  60
TKSKVSKNDF SIITPSESCP IQPKMSNNNS SSSPRFLSFN NTNKTSSHHV QGCKIEAVDE  120
MYLCDSSDEK FFPNPNSKSC CYDQKDNTAG RKRIPSIDQH HIIAERKRRE KLSQRFVELS  180
AILPDLKKVD KASILEQAIN HVKELQEKVQ LLEEQKKATP QQESVMFVSK TQLKMEEDEY  240
SSSSAGDLPA DIEVRFSDNR VLIRITCARH NAFVLNILTE IEKLRLTIIQ SCMMPFGKHA  300
TDVTVVAKMD ESFCMTLKDL AKHLRMITGR LMTQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150168RKRIPSIDQHHIIAERKRR
2164169ERKRRE
3165170RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357746.11e-150PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2G3AB480.0A0A2G3AB48_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000786961e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-36bHLH family protein