PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g24540
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 248aa    MW: 27481.3 Da    PI: 9.1691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g24540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-1462109355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  CA02g24540  62 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIKYIKQLE 109
                 56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.96159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-1262109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-1863124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1764122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-1364113No hitNo description
SMARTSM003536.9E-1665114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKVKSEVPSG TTINFSSSSS METDDFGDSQ SLIQALGFPF GAADTNTTTQ KKSYSRTSLQ  60
AQDHVLAERK RRERLTQRFI ALSTLIPNLK KLDKATVLGD AIKYIKQLEE QLKTLEEKTK  120
KCKEVEQVVA VKRPRLASSC DDSSSSGEIS SVSTDRSLPD IEVRTSDGNI LIRIYCKKQT  180
GIMKEIFNEV DKLHLSVVSC SVMPFGYNTS HMTIIAQMDH KWSVTPNHIA NRIRAVIMKE  240
EASSGTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1463128874Transcription factor MYC2
5gnj_B6e-1463128874Transcription factor MYC2
5gnj_E6e-1463128874Transcription factor MYC2
5gnj_F6e-1463128874Transcription factor MYC2
5gnj_G6e-1463128874Transcription factor MYC2
5gnj_I6e-1463128874Transcription factor MYC2
5gnj_M6e-1463128874Transcription factor MYC2
5gnj_N6e-1463128874Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560886.11e-179PREDICTED: transcription factor bHLH25-like
TrEMBLA0A2G3AB500.0A0A2G3AB50_CAPAN; Uncharacterized protein
STRINGSolyc02g091810.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-35bHLH family protein