PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g24550
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 180aa    MW: 20253.2 Da    PI: 9.6913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g24550genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-152168355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                + h  +Er+RR+r+ + f +L +l+P +     kKl+Ka+iL  A++YIk+L+
  CA02g24550 21 QDHVLAERKRRERLTQYFVTLSTLIPDL-----KKLDKASILGDAIKYIKQLE 68
                56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8911867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-132168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-182284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-182387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.25E-142372No hitNo description
SMARTSM003531.5E-162473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGFGAGEAKK TSNSRTPLQA QDHVLAERKR RERLTQYFVT LSTLIPDLKK LDKASILGDA  60
IKYIKQLEEQ VKSLEEETKK YNEEPVAAVK RPRVLTSYDN STISNENSNK SVPNIEVRAN  120
SDGNVLIRIY CKKQARIVKE IFSQVEMLHL TITSSSVIPF GYNTTDITIV AQVLYNLTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755142e-42HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562188.11e-121PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1U8G0M31e-120A0A1U8G0M3_CAPAN; transcription factor bHLH18-like
STRINGPGSC0003DMT4000786997e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-44bHLH family protein