PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g24820
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRF
Protein Properties Length: 579aa    MW: 62407.1 Da    PI: 7.8936
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g24820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.51.4e-24212256145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+
  CA02g24820 212 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKHVES 256
                 79****************************************986 PP
2QLQ621.6e-21143179137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 ++FT++Q+++L++Q+l+yK+L+an+P+P++Ll +++k
  CA02g24820 143 GPFTPSQWMELEHQALIYKHLVANVPIPHQLLIPLKK 179
                 59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.0E-13143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-15144177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.633144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726212256IPR014977WRC domain
PfamPF088798.9E-21213255IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDFGGLVTME AVTVQESETT SNSNGSGQLR KERSGPRDDN TWRSCKVTKP ADDFSTPANF  60
FMRSASPNDG RGRSTMLSFS FPKSEEIPFL CTTNNVPAQD SARTLAFPLF DSGSHYSRAA  120
SAYASASGGS NESSCGPFAR FRGPFTPSQW MELEHQALIY KHLVANVPIP HQLLIPLKKS  180
LNPYAFSGLS AGPYASNWGW GTFHLGFAGN TDPEPGRCRR TDGKKWRCSR EAVPDQKYCE  240
RHINRGRHRS RKHVESQNGH VVSGSTTSKV ASVAPSSSAS VIPSSGTSNN LGAVQHQFNN  300
LQPSAANPST EQLVNRMKDH KGVNMISPTI GLKPKDLAIS VQKQHNGFEL SSQTDFGLVS  360
SDSLLNPSQR NSFVNPKNAN AFLDFNDQEQ SEQHPVHHFI DGWNKEQSSR ASASWPDQLN  420
LDWTQLSMSI PMAASDFASS SSPRQEKLTL SPLRLSRDLD PIQMGLGVVN SYGEGMQKTA  480
NWVPVSWENT LGGPLGEALN NTAGSAGDGK SASAFNLATE VWDNSPPFGS SPTGVLQKST  540
FVSLSNSSSG GSPRGDSKKV HEGIGMCDEV IGSTLAFP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560919.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A2G3AB320.0A0A2G3AB32_CAPAN; Growth-regulating factor 8
STRINGXP_009589483.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-98growth-regulating factor 1