PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g25100

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 224aa MW: 24474.8 Da PI: 7.7243

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g25100	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.6	3.5e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA r+ +Pv+Gavg++++++++++q+++e+ CA02g25100 2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100 6***********************************************************************************************999 PP DUF260 95 all 97 +l+ CA02g25100 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.251	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASLEI 120 DEVSECNNTF KLQDPSVNML QQKRRRSPKE TSMLTDLNLS LTAGFNQQVY NNSHTLPEKH 180 VRPGTPSMNS EESGTTSTCF QSVGVVIGDH YQGKEPKLLS LFN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560963.1	1e-165	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9FN11	6e-78	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2G3ABD3	1e-165	A0A2G3ABD3_CAPAN; LOB domain-containing protein 38
STRING	Solyc02g092550.2.1	1e-136	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-80	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]