PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g25540
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 119aa    MW: 13505.8 Da    PI: 8.0451
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g25540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1725112396
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 k l++s+v++  ++ lp +f+++h    ++++ ++le+e+g ++e+k+i +k++    l++GW++++ a++L egD++vF+l++ ++f+ +++v
  CA02g25540  25 KYLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESENGDEFEIKYIAEKTG----LSAGWRKYAAAQKLVEGDVLVFQLVEPTRFKVTLQV 112
                 7899*****************99953..45567***************777777....************************988888776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2018109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-1818110IPR015300DNA-binding pseudobarrel domain
CDDcd100178.27E-2221110No hitNo description
SMARTSM010192.3E-1623116IPR003340B3 DNA binding domain
PROSITE profilePS5086311.46223114IPR003340B3 DNA binding domain
PfamPF023622.9E-1524111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MKSPIIIRAE EFLSNLGNEY PSCMKYLVRS HVGSCFWMGL PVPFCKNHLP RKDTPVILES  60
ENGDEFEIKY IAEKTGLSAG WRKYAAAQKL VEGDVLVFQL VEPTRFKVTL QVSFYNML*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0488891e-134GU048889.1 Capsicum annuum clone BAC CaCM699L14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561108.12e-73PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_016561109.12e-73PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
SwissprotQ5KQI47e-33Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2G2XHD34e-72A0A2G2XHD3_CAPBA; Uncharacterized protein
STRINGSolyc02g090710.2.13e-65(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2177422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-32B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]