PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g25770

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 326aa MW: 36526.2 Da PI: 7.8464

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g25770	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.5	4.9e-43	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l ++k+ CA02g25770 18 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQHKLKQVQDDLLAAKK 116 7********************************************************************************************999887 PP DUF260 100 e 100 e CA02g25770 117 E 117 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.776	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-43	18	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MCTFLFFRNR RMSSSSSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HKVFGASNVA 60 KLLNELNAAQ REDAVNSLAY EAEYRLRDPV YGCVGLISLL QHKLKQVQDD LLAAKKELTN 120 YIGPSAMLPI NLQPPGFIPQ HHMNVPSSST MMPFNMNPIL GMPTGVPQGG QLMIRDPQQQ 180 QQQIIEAQQF AAALAAREQR EQQEMLGNYE QQQQQQQEQH PSQQHDILRF HSGLDSTSSV 240 TATGFHQMSS PISPSLVLVG TPENPHNLFP PTGQHGHSYP SYQERQLQSQ LLLQQQQPPP 300 QQPETPRQQQ RAKSQEEARS TGPSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	14	121	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	14	121	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562224.1	0.0	PREDICTED: LOB domain-containing protein 36-like isoform X1
Swissprot	Q9FKZ3	2e-79	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1U8G2M7	0.0	A0A1U8G2M7_CAPAN; LOB domain-containing protein 36-like isoform X1
STRING	XP_009792980.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-68	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]