PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g25980
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 238aa    MW: 25035 Da    PI: 8.8262
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g25980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222e-382382362
      zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++l+cprCds ntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++P+Ggg+rkn k+s
  CA02g25980 23 PEHLPCPRCDSINTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGSRKNAKRS 82
                57899***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-281980IPR003851Zinc finger, Dof-type
PfamPF027012.2E-332580IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9292680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MPSDVNERRV TKQQQGGAPA PEPEHLPCPR CDSINTKFCY YNNYNFSQPR HFCKACRRYW  60
THGGTLRDIP IGGGSRKNAK RSRTITTNSS LSSTLSPRDY QHASNPSAFL VPLTADHGGS  120
LPFDVKPNVN MCGSFTSLLS SAQGPGGLLA LGGFGLGVGV GSGIEDMGFG LGRPIWPFPG  180
VSHSNVENNS ANGTGASMLG STWQLASGGE GGFVGATAGE IFNFPDLAIS THGNRMK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-129HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562226.11e-175PREDICTED: dof zinc finger protein DOF3.4
TrEMBLA0A1U8FST11e-174A0A1U8FST1_CAPAN; Dof zinc finger protein DOF1.6
TrEMBLA0A2G3ABF11e-174A0A2G3ABF1_CAPAN; dof zinc finger protein DOF3.4
STRINGPGSC0003DMT4000261371e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45322241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.18e-46OBF binding protein 1