PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g26030
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 323aa    MW: 37327.4 Da    PI: 7.2378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g26030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-14799199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                ffk++   ++  ++rl++pk+f+++++++++      l+ + g++  v++  +++ +  +v+ +GW+ Fvk+++L++ D +vFk+dg s+f   v++f+ 
  CA02g26030  7 FFKIM---MNDFRNRLRIPKRFVTSFKNSNKLLGRKFLTGPCGKTCLVEV--KRTEEDdFVFCNGWEIFVKDHHLDDADLLVFKMDGFSGF--DVTIFDP 99
                77777...5566788***********55555555778899**********..5555555*************************9887999..9998875 PP
2B351.41.9e-16219295585
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 + ++ +  +g+l +p+  a+eh+ +k e  t+tl+  ++gr+W   +  r + ++ v+++GW++Fv +n+L+e D++vF+l 
  CA02g26030 219 M-KPTHVYNGQLKFPRAWAQEHMRQKSE--TITLRIpSTGRTWPASI--RCRMEGLVIQSGWEDFVMDNRLDEFDVCVFELA 295
                 3.445555678***********988555..7777775689*******..899999*************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-192106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-192102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.5324100IPR003340B3 DNA binding domain
CDDcd100171.31E-17598No hitNo description
SMARTSM010194.1E-97100IPR003340B3 DNA binding domain
PfamPF023628.4E-12798IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-18209298IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19209298IPR015300DNA-binding pseudobarrel domain
CDDcd100179.13E-14213294No hitNo description
PROSITE profilePS5086311.744214311IPR003340B3 DNA binding domain
SMARTSM010192.3E-6216315IPR003340B3 DNA binding domain
PfamPF023623.7E-14219295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDKNKSFFKI MMNDFRNRLR IPKRFVTSFK NSNKLLGRKF LTGPCGKTCL VEVKRTEEDD  60
FVFCNGWEIF VKDHHLDDAD LLVFKMDGFS GFDVTIFDPS ACEKEEPSSE DDPSCEEINY  120
GYDDDDDDTT DEEDNIQEVT SRKSSHGKQY QFHSPQPSKG RKKKKILVAK EDNKKRKCTP  180
EENSCSYSNR RQVPEKEKMR VHQQASRHTS SVPCVLMKMK PTHVYNGQLK FPRAWAQEHM  240
RQKSETITLR IPSTGRTWPA SIRCRMEGLV IQSGWEDFVM DNRLDEFDVC VFELALGGKH  300
NSIPVILDVH IYPVKNEIIG PL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162176KKKILVAKEDNKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154283e-34AC215428.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0226F10, complete sequence.
GenBankHG9755143e-34HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561158.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A1U8FXL30.0A0A1U8FXL3_CAPAN; Uncharacterized protein
TrEMBLA0A2G3ABH70.0A0A2G3ABH7_CAPAN; B3 domain-containing protein LOC_Os12g40080-like isoform X1
STRINGSolyc02g090170.2.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-21B3 family protein